PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_E80867546.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 700aa    MW: 82208.5 Da    PI: 8.3286
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_E80867546.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.52.9e-2510104191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 
                            +fYn+YA e GFsvrk + +  + n++i+ r++vCs+eg ree++ k   ++++r++r+ tr+gCkak+++ +   +g+w v+++  e
  Traes_6DL_E80867546.1  10 EFYNKYALEKGFSVRKGYVEWDEANEKIILRKLVCSREGCREEKHMKrkrEDRKRKPRNITRVGCKAKFVIVRVAkTGRWFVKDFIDE 97 
                            6*****************************************99988777889999************99877766************ PP

                   FAR1  85 HnHelap 91 
                            HnH+lap
  Traes_6DL_E80867546.1  98 HNHPLAP 104
                            ****986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-2310104IPR004330FAR1 DNA binding domain
PfamPF105512.7E-36225319IPR018289MULE transposase domain
PROSITE profilePS509669.891503542IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MFHSEDEGFE FYNKYALEKG FSVRKGYVEW DEANEKIILR KLVCSREGCR EEKHMKRKRE  60
DRKRKPRNIT RVGCKAKFVI VRVAKTGRWF VKDFIDEHNH PLAPRDLACF LRSHRRISDE  120
QKADIIEMES VGIRKHKIMD VLCMQYGGYD HVGCMTRDIY NFCHRYKQET VAAGDAQTVI  180
CHMMARQERD PDYFFKYLVD KDGHLKGLFW SDTQSRLDYE AFGDVVVFDS TYRTNKYNLP  240
FVPFVGLNHH RSTVIFGCGI ISHETNEAYE WMLRTFSEAM SQKHPISVIT DGDLAMQRAI  300
RVVWPDSYHR LCVWHIQQNI IRHLHDDEVR EEFRSFIYDS SSIEEHERKW IEFLRRNEVT  360
SEESWLHQMY QMRKLWCAPY LVGRCFLGLS SNQRSESLNS VLHTHLEGKM TLFDMLEHYE  420
RCLSGRRLNE AILDIVALQS VPFTDADASS LEKHAARVFT PCMFQLVRWS ISVVRKCVIS  480
EILDAWELTT YVVAKIDRRE KKFEVRCEMK EGSLYRISCS CRKLECLGTP CSHIFYILGI  540
CQVELLPWCC VPMRWTMSAK SAFPPTRKSE MYDYSASLMR YRELRNLSHA ACFRACQSSE  600
EYQHLKMVLS EQDGSKESSR GEEECIRFGP VLPQTTEIDC GDLEKVLDPV HVQGRGAPKK  660
RLQAKMKKQR SKRKCGYCGV EGHNRRKCNK LKEEMMAANC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15764KREDRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231784.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5H0I00.0W5H0I0_WHEAT; Uncharacterized protein
STRINGBRADI2G37795.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-96FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]